{"id":51872,"date":"2024-01-16T10:14:31","date_gmt":"2024-01-16T10:14:31","guid":{"rendered":"https:\/\/matis.is\/?p=51872"},"modified":"2024-01-16T10:14:32","modified_gmt":"2024-01-16T10:14:32","slug":"chloroplast-markers-for-the-malvaceae-and-the-plastome-of-hendersons-checkermallow-sidalcea-hendersonii-s-wats-a-rare-plant-from-the-pacific-northwest","status":"publish","type":"post","link":"https:\/\/matis.is\/en\/greinar\/chloroplast-markers-for-the-malvaceae-and-the-plastome-of-hendersons-checkermallow-sidalcea-hendersonii-s-wats-a-rare-plant-from-the-pacific-northwest\/","title":{"rendered":"Chloroplast markers for the Malvaceae and the plastome of Henderson&#039;s checkermallow (Sidalcea hendersonii S.Wats.), a rare plant from the Pacific Northwest.\u00a0"},"content":{"rendered":"<h3 class=\"wp-block-heading\">Objective<\/h3>\n\n\n\n<p><em>Sidalcea<\/em>&nbsp;is a genus of flowering plants restricted to the west coast of North America, commonly known as checkermallows. Remarkably, of the ~ 30 recognized species, 16 are of conservation concern (vulnerable, imperiled or critically imperiled). To facilitate biological studies in this genus, and in the wider Malvaceae, we have sequenced the whole plastid genome of&nbsp;<em>Sidalcea hendersonii<\/em>. This will allow us both to check those regions already developed as general Malvaceae markers in a previous study, and to search for new regions.<\/p>\n\n\n\n<h3 class=\"wp-block-heading\">Results<\/h3>\n\n\n\n<p>By comparing the&nbsp;<em>Sidalcea<\/em>&nbsp;genome to that of&nbsp;<em>Althaea<\/em>, we have identified a hypervariable approximately 1 kb region in the short single copy region. This region shows promise for examining phylogeographic patterns, hybridization and haplotype diversity. Remarkably, considering the conservation of plastome architecture between&nbsp;<em>Sidalcea<\/em>&nbsp;and&nbsp;<em>Althaea<\/em>, the former has a 237 bp deletion in the otherwise highly conserved inverted repeat region. Newly designed primers provide a PCR assay to determine the presence of this indel across the Malvaceae. Screening of previously designed chloroplast microsatellite markers indicates two markers with variation within&nbsp;<em>S. hendersonii<\/em>&nbsp;that would be useful in future population conservation genetics.<\/p>","protected":false},"excerpt":{"rendered":"<p>Objective Sidalcea&nbsp;is a genus of flowering plants restricted to the west coast of North America, commonly known as checkermallows. Remarkably, [&hellip;]<\/p>\n","protected":false},"author":3,"featured_media":0,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"template-greinar.php","format":"standard","meta":{"_acf_changed":false,"_uag_custom_page_level_css":"","site-sidebar-layout":"default","site-content-layout":"","ast-site-content-layout":"default","site-content-style":"default","site-sidebar-style":"default","ast-global-header-display":"","ast-banner-title-visibility":"","ast-main-header-display":"","ast-hfb-above-header-display":"","ast-hfb-below-header-display":"","ast-hfb-mobile-header-display":"","site-post-title":"","ast-breadcrumbs-content":"","ast-featured-img":"","footer-sml-layout":"","ast-disable-related-posts":"","theme-transparent-header-meta":"","adv-header-id-meta":"","stick-header-meta":"","header-above-stick-meta":"","header-main-stick-meta":"","header-below-stick-meta":"","astra-migrate-meta-layouts":"default","ast-page-background-enabled":"default","ast-page-background-meta":{"desktop":{"background-color":"var(--ast-global-color-5)","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-opacity":"","overlay-gradient":""},"tablet":{"background-color":"","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-opacity":"","overlay-gradient":""},"mobile":{"background-color":"","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-opacity":"","overlay-gradient":""}},"ast-content-background-meta":{"desktop":{"background-color":"var(--ast-global-color-4)","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-opacity":"","overlay-gradient":""},"tablet":{"background-color":"var(--ast-global-color-4)","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-opacity":"","overlay-gradient":""},"mobile":{"background-color":"var(--ast-global-color-4)","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-opacity":"","overlay-gradient":""}},"footnotes":""},"categories":[2011],"tags":[],"class_list":["post-51872","post","type-post","status-publish","format-standard","hentry","category-greinar"],"acf":[],"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v27.4 - https:\/\/yoast.com\/product\/yoast-seo-wordpress\/ -->\n<title>Chloroplast markers for the Malvaceae and the plastome of Henderson\u2019s checkermallow (Sidalcea hendersonii\u00a0S.Wats.), a rare plant from the Pacific Northwest.\u00a0 - Mat\u00eds<\/title>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/matis.is\/en\/greinar\/chloroplast-markers-for-the-malvaceae-and-the-plastome-of-hendersons-checkermallow-sidalcea-hendersonii-s-wats-a-rare-plant-from-the-pacific-northwest\/\" \/>\n<meta property=\"og:locale\" content=\"en_GB\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"Chloroplast markers for the Malvaceae and the plastome of Henderson\u2019s checkermallow (Sidalcea hendersonii\u00a0S.Wats.), a rare plant from the Pacific Northwest.\u00a0 - Mat\u00eds\" \/>\n<meta property=\"og:description\" content=\"Objective Sidalcea&nbsp;is a genus of flowering plants restricted to the west coast of North America, commonly known as checkermallows. 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