{"id":52663,"date":"2024-05-15T12:20:38","date_gmt":"2024-05-15T12:20:38","guid":{"rendered":"https:\/\/matis.is\/?p=52663"},"modified":"2024-05-15T12:20:40","modified_gmt":"2024-05-15T12:20:40","slug":"the-gut-microbiome-of-farmed-arctic-char-salvelinus-alpinus-is-shaped-by-feeding-stage-and-nutrient-presence","status":"publish","type":"post","link":"https:\/\/matis.is\/en\/greinar\/the-gut-microbiome-of-farmed-arctic-char-salvelinus-alpinus-is-shaped-by-feeding-stage-and-nutrient-presence\/","title":{"rendered":"\u00a0The gut microbiome of farmed Arctic char (Salvelinus alpinus) is shaped by feeding stage and nutrient presence"},"content":{"rendered":"<p>The gut microbiome plays an important role in maintaining the health and productivity of farmed fish. However, the functional role of most gut microorganisms remains unknown. Identifying the stable members of the gut microbiota and understanding their functional roles could help in the selection of positive traits or act as a proxy for fish health in aquaculture. Here, we analyze the gut microbial community of farmed juvenile Arctic char (<em>Salvelinus alpinus<\/em>) and reconstruct the metabolic potential of its main symbionts. The gut microbiota of Arctic char undergoes a succession in community composition during the first weeks post-hatch, with a decrease in Shannon diversity and the establishment of three dominant bacterial taxa. The genome of the most abundant bacteria, a\u00a0<em>Mycoplasma<\/em>\u00a0sp., shows adaptation to rapid growth in the nutrient-rich gut environment. The second most abundant taxon, a\u00a0<em>Brevinema<\/em>\u00a0sp., has versatile metabolic potential, including genes involved in host mucin degradation and utilization. However, during periods of absent gut content, a\u00a0<em>Ruminococcaceae<\/em>\u00a0bacterium becomes dominant, possibly outgrowing all other bacteria through the production of secondary metabolites involved in quorum sensing and cross-inhibition while benefiting the host through short-chain fatty acid production. Whereas\u00a0<em>Mycoplasma<\/em>\u00a0is often present as a symbiont in farmed salmonids, we show that the\u00a0<em>Ruminococcaceae<\/em>\u00a0species is also detected in wild Arctic char, suggesting a close evolutionary relationship between the host and this symbiotic bacterium.<\/p>","protected":false},"excerpt":{"rendered":"<p>The gut microbiome plays an important role in maintaining health and productivity of farmed fish. However, the functional role of [&hellip;]<\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"template-greinar.php","format":"standard","meta":{"_acf_changed":false,"_uag_custom_page_level_css":"","site-sidebar-layout":"default","site-content-layout":"","ast-site-content-layout":"default","site-content-style":"default","site-sidebar-style":"default","ast-global-header-display":"","ast-banner-title-visibility":"","ast-main-header-display":"","ast-hfb-above-header-display":"","ast-hfb-below-header-display":"","ast-hfb-mobile-header-display":"","site-post-title":"","ast-breadcrumbs-content":"","ast-featured-img":"","footer-sml-layout":"","ast-disable-related-posts":"","theme-transparent-header-meta":"","adv-header-id-meta":"","stick-header-meta":"","header-above-stick-meta":"","header-main-stick-meta":"","header-below-stick-meta":"","astra-migrate-meta-layouts":"default","ast-page-background-enabled":"default","ast-page-background-meta":{"desktop":{"background-color":"var(--ast-global-color-5)","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-opacity":"","overlay-gradient":""},"tablet":{"background-color":"","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-opacity":"","overlay-gradient":""},"mobile":{"background-color":"","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-opacity":"","overlay-gradient":""}},"ast-content-background-meta":{"desktop":{"background-color":"var(--ast-global-color-4)","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-opacity":"","overlay-gradient":""},"tablet":{"background-color":"var(--ast-global-color-4)","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-opacity":"","overlay-gradient":""},"mobile":{"background-color":"var(--ast-global-color-4)","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-opacity":"","overlay-gradient":""}},"footnotes":""},"categories":[2011],"tags":[],"class_list":["post-52663","post","type-post","status-publish","format-standard","hentry","category-greinar"],"acf":[],"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v27.4 - https:\/\/yoast.com\/product\/yoast-seo-wordpress\/ -->\n<title>\u00a0The gut microbiome of farmed Arctic char (Salvelinus alpinus) is shaped by feeding stage and nutrient presence - Mat\u00eds<\/title>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/matis.is\/en\/greinar\/the-gut-microbiome-of-farmed-arctic-char-salvelinus-alpinus-is-shaped-by-feeding-stage-and-nutrient-presence\/\" \/>\n<meta property=\"og:locale\" content=\"en_GB\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"\u00a0The gut microbiome of farmed Arctic char (Salvelinus alpinus) is shaped by feeding stage and nutrient presence - Mat\u00eds\" \/>\n<meta property=\"og:description\" content=\"The gut microbiome plays an important role in maintaining health and productivity of farmed fish. 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