Peer-reviewed articles

Discriminating populations of Atlantic herring mixing in the Norwegian Sea feeding ground using single nucleotide polymorphisms (SNPs)

Atlantic herring Clupea harengus feeding in the Norwegian Sea are assumed to consist of Norwegian spring spawners (NSSH), Icelandic summer spawners (ISSH) and North Sea autumn spawners (NSAH). Putative Norwegian autumn spawners (NASH), Faroese autumn (FASH) and spring (FSSH) spawners also feed in the area.

However, until there is a method to discriminate between populations in mixed samples, fishery and survey data from the Norwegian Sea will be solely attributed to the predominating NSSH, ultimately causing biased stock assessments.

Hence, we evaluated if a panel of 120 single nucleotide polymorphisms (SNPs) associated with spawning characteristics and salinity preferences would be an effective discrimination tool. The overall observed levels of genetic differentiation were high (FST = 0.57, p < 0.001, 95% CI: 0.51−0.62). Spawners from stocks under current management (NSSH, NSAH and ISSH) were well separated, but the putative populations were not. Discriminant analysis of principal component as well as Structure runs confirmed the differentiation observed with FST. When the SNP panels were tested on commercial fishery samples of NSSH east of Iceland, up to 16% were assigned to ISSH.

This implies that catch data are seriously biased and demonstrates the potential of SNP panels as a tool to solve the problem. However, work is needed to develop improved SNP panels that effectively separate the putative populations from the managed stocks. We recommend that such a tool should be established in regular sampling of fisheries and surveys in the Norwegian Sea and accounted for in future stock assessments, advice and management.

Peer-reviewed articles

Photonic management of Spirulina (Arthrospira platensis) in scalable photobioreactors to achieve biologically active unopposed vitamin B12

Dietary vitamin B12 deficiency is one of the most common micronutrient deficiencies worldwide, with over a billion individuals suffering from low levels of the vitamin. While ruminant-derived meat and dairy products play a crucial role in providing the recommended B12 dietary allowance (2.4 μg/day), increasing the production and consumption of meat and milk entails substantial environmental ramifications.

Spirulina blue-green algae (Arthrospira platensis) has been widely proposed as healthier and more sustainable substitutes for meat, milk, and dairy products (also known as meat and milk analogues). However, previous research has shown that while Spirulina contains desirable macro- and micro-nutrients (eg, essential amino acids, calcium, potassium, magnesium, iron), the majority of vitamin B12 found in so-called traditional Spirulina is a non-active , pseudo-form (cobamide), unavailable to humans, referred to as pseudo-vitamin B12. This renders traditional Spirulina a limited alternative to animal-source foods. As a response, in this exploratory in vitro study, we ask whether light conditions may enhance active vitamin B12 production in Spirulina.

We describe the use of scalable photobioreactors, artificially illuminated, located in the Hengill area of Iceland. These systems are used to cultivate Photosynthetically Controlled Spirulina (PCS), to produce carbon–neutral and nutritious biomass containing unopposed, biologically active vitamin B12, in levels comparable to beef (1.64 μg/100g in PCS with a standard deviation of 5% versus 0.7– 1.5 μg/100g in beef). In terms of mitigating global vitamin B12 deficiency, we explore production scale up scenarios.

In one scenario, by re-allocating the electricity currently consumed by heavy industry, Iceland could produce 277,950 tonnes of Spirulina biomass per year, which translates into approximately 4555 g per year of active vitamin B12, able to meet the recommended dietary allowance ( RDA) of over 13.8 million children aged 1–3. More ambitious production scenarios could see Iceland providing the RDA for over 26.5 million children aged 1–3, and over 50 million children aged 0–6 months.

Peer-reviewed articles

Near-Infrared Spectroscopy and Chemometrics for Effective Online Quality Monitoring and Process Control during Pelagic Fishmeal and Oil Processing

Near-infrared spectroscopy has become a common quality assessment tool for fishmeal products during the last two decades. However, to date it has not been used for active online quality monitoring during fishmeal processing. Our aim was to investigate whether NIR spectroscopy, in combination with multivariate chemometrics, could actively predict the changes in the main chemical quality parameters of pelagic fishmeal and oil during processing, with an emphasis on lipid quality changes. Results indicated that partial least square regression (PLSR) models from the NIR data effectively predicted proximate composition changes during processing (with coefficients of determination of an independent test set at 𝑅2𝐶𝑉RCV2 = 0.9938, RMSECV = 2.41 for water; 𝑅2𝐶𝑉RCV2 = 0.9773, RMSECV = 3.94 for lipids; and 𝑅2𝐶𝑉RCV2 = 0.9356, RMSECV = 5.58 for FFDM) and were successful in distinguishing between fatty acids according to their level of saturation (SFA (𝑅2𝐶𝑉=0.9928, 𝑅𝑀𝐸𝐶𝑉=0.24)RCV2=0.9928, RMSECV=0.24 𝑅2𝐶𝑉=0.8291, 𝑅𝑀𝑆𝐸𝐶𝑉=1.49)RCV2=0.8291, RMSECV=1.49), PUFA (𝑅2𝐶𝑉=0.8588, 𝑅𝑀𝑆𝐸𝐶𝑉=1.49)RCV2=0.8291, RMSECV=1.49). This technique also allowed the prediction of phospholipids (PL 𝑅2𝐶𝑉=0.8617, 𝑅𝑀𝑆𝐸𝐶𝑉=0.11RCV2=0.8617, RMSECV=0.11, and DHA (𝑅2𝐶𝑉=0.8785, 𝑅𝑆𝐶𝑉=0.89) and EPA content. 𝑅2𝐶𝑉=0.8689 , 𝑅𝑀𝑆𝐸𝐶𝑉=0.62)RCV2=0.8689, RMSECV=0.62) throughout processing. NIR spectroscopy in combination with chemometrics is, thus, a powerful quality assessment tool that can be applied for active online quality monitoring and processing control during fishmeal and oil processing.

Peer-reviewed articles

Atmospheric dispersal shapes rapid bacterial colonization of Icelandic Lava Rocks

Contact

Aurélien Daussin

Specialist

aurelien@matis.is

Microorganisms released into the atmosphere by various disturbances can travel significant distances before depositing, yet their impact on community assembly remains unclear. To address this, we examined atmospheric and lithospheric bacterial communities in 179 samples collected at two distinct Icelandic volcanic sites: a small volcanic island Surtsey, and a volcanic highland Fimmvörðuháls using 16S rRNA amplicon sequencing.

Airborne microbial communities were similar between sites while significant differences emerged in the communities on lava rocks after 1-year exposure. SourceTracker analysis revealed distinct bacterial populations in the atmosphere and the lava rocks with surrounding soil contributed more significantly to lava rock microbial composition. Nevertheless, shared genera among air, rocks, and local sources, suggested potential exchange between these environments. The prevalent genera shared between rocks and potential sources exhibited stress-resistant properties, likely helping their survival during air transportation and facilitating their colonization of the rocks.

We hypothesize that the atmosphere serves as a conduit for locally sourced microbes and stress-resistant distant-sourced microbes. Additionally, bacterial communities on the lava rocks of Fimmvörðuháls showed remarkable similarity after 1 and 9 years of exposure, suggesting rapid establishment. Our study reveals that atmospheric deposition significantly influences bacterial community formation, potentially influencing ecosystem dynamics and microbial communities' resilience.

Peer-reviewed articles

Inter-facility characterization of bacteria in seafood processing plants: Exploring potential reservoirs of spoilage organisms and the resistome

A study was conducted in fish processing facilities to investigate the microbial composition, microbial metabolic potential, and distribution of antibiotic resistance genes. Whole metagenomic sequencing was used to analyze microbial communities from different processing rooms, operators and fish products. Taxonomic analyzes identified the genera Pseudomonas and Psychrobacter as the most prevalent bacteria. A Principal Component Analysis revealed a distinct separation between fish product and environmental samples, as well as differences between fish product samples from companies processing either Gadidae or Salmonidae fish. Some particular bacterial genera and species were associated with specific processing rooms and operators. Metabolic analysis of metagenome assembled genomes demonstrated variations in microbiota metabolic profiles of microbiota across rooms and fish products. The study also examined the presence of antibiotic-resistance genes in fish processing environments, contributing to the understanding of microbial dynamics, metabolic potential, and implications for fish spoilage.

Peer-reviewed articles

Catalyzing progress in the blue economy through joint marine microbiome research across the Atlantic

Contact

René Groben

Project Manager

rene.groben@matis.is

International agreements recognize the importance of cooperative scientific research to conserve and promote sustainable development of a shared Atlantic Ocean. In 2022, the All-Atlantic Ocean Research and Innovation Alliance Declaration was signed. The All-Atlantic Declaration continues and extends relations forged by the Galway Statement on Atlantic Ocean Cooperation and the Belém Statement on Atlantic Ocean Research and Innovation Cooperation. These efforts are consistent with programs, actions, and aims of the United Nations Decade of Ocean Science for Sustainable Development. In preparation for implementation of the All-Atlantic Declaration, members of the Marine Microbiome Working Group and the Marine Biotechnology Initiative for the Atlantic under the Galway and Belém Statements respectively, joined forces to call for cooperation across the Atlantic to increase marine microbiome and biotechnology research to promote ocean health and a sustainable bioeconomy. This article reviews the goals of the marine microbiome and biotechnology initiatives under the Galway and Belém Statements and outlines an approach to implement those goals under the All-Atlantic Declaration through a Blue Biotech and Marine Microbiome (BBAMM) collaboration.

Peer-reviewed articles

 A total of 219 metagenome-assembled genomes of microorganisms from Icelandic marine waters

Contact

René Groben

Project Manager

rene.groben@matis.is


Marine microorganisms contribute to the health of the global ocean by supporting the marine food web and regulating biogeochemical cycles. Assessing marine microbial diversity is a crucial step towards understanding the global ocean. The waters surrounding Iceland are a complex environment where relatively warm salty waters from the Atlantic cool down and sink down to the deep. Microbial studies in this area have focused on photosynthetic micro- and nanoplankton mainly using microscopy and chlorophyll measurements. However, the diversity and function of the bacterial and archaeal picoplankton remains unknown. Here, we used a co-assembly approach supported by a marine mock community to reconstruct metagenome-assembled genomes (MAGs) from 31 metagenomes from the sea surface and seafloor of four oceanographic sampling stations sampled between 2015 and 2018. The resulting 219 MAGs include 191 bacterial, 26 archaeal and two eukaryotic MAGs to bridge the gap in our current knowledge of the global marine microbiome.

Peer-reviewed articles

Marine Microbial Communities of North and South Shelves of Iceland

Contact

René Groben

Project Manager

rene.groben@matis.is

The North Atlantic Ocean surrounds Iceland, influencing its climate and hosting a rich ecosystem that provides the Icelandic nation with economically valuable marine species. The basis of the Icelandic marine ecosystem consists of communities of diverse microorganisms including bacteria, archaea, and unicellular eukaryotes. While the primary production of Icelandic waters has been monitored since the 50s, there is limited knowledge of the taxonomic and metabolic diversity of the marine microorganisms in Icelandic waters based on molecular techniques. In this study, we conducted annual sampling at four hydrographic stations over several years to characterize marine microbial communities and their metabolic potential. Using 16S ribosomal RNA gene amplicon sequencing and metagenomics, we resolved the microbial community composition on the North and South Shelves of Iceland, analyzed its evolution from 2011 to 2018, identified frequently occurring taxa, and predicted their potential metabolism. The results showed correlations between the marine microbial community profiles and the water masses in spring, between the North and South Shelves of Iceland. The differences in marine microbial diversity appear to be linked to the average seawater temperature in the mixed surface layer at each sampling station which also constrains the relative abundance of photosynthetic microorganisms. This study sets a baseline for the marine microbial diversity in Icelandic marine waters and identified three photosynthetic microorganisms – the cyanobacteria Synechococcus and two members of the Chlorophyta clade – as valuable indicator species for future monitoring, as well as for application in ecosystem modeling in context with research on climate change.

Peer-reviewed articles

The distribution and diversity of eukaryotic phytoplankton in the Icelandic marine environment

Contact

René Groben

Project Manager

rene.groben@matis.is

Phytoplankton play a crucial role in the marine food web and are sensitive indicators of environmental change. Iceland is at the center of a contrasting hydrography, with cold Arctic water coming in from the north and warmer Atlantic water from the south, making this geographical location very sensitive to climate change. We used DNA metabarcoding to determine the biogeography of phytoplankton in this area of accelerating change. Seawater samples were collected in spring (2012–2018), summer (2017) and winter (2018) together with corresponding physico-chemical metadata around Iceland. Amplicon sequencing of the V4 region of the 18S rRNA gene indicates that eukaryotic phytoplankton community composition is different between the northern and southern water masses, with some genera completely absent from Polar Water masses. Emilia was more dominant in the Atlantic-influenced waters and in summer, and Phaeocystis was more dominant in the colder, northern waters and in winter. The Chlorophyta picophytoplankton genus, Micromonas, was similarly dominant to the dominant diatom genus, Chaetoceros. This study presents an extensive dataset which can be linked with other 18s rRNA datasets for further investigation into the diversity and biogeography of marine protists in the North Atlantic.

Peer-reviewed articles

 The gut microbiome of farmed Arctic char (Salvelinus alpinus) is shaped by feeding stage and nutrient presence

Contact

Sigurlaug Skírnisdóttir

Project Manager

sigurlaug.skirnisdottir@matis.is

The gut microbiome plays an important role in maintaining the health and productivity of farmed fish. However, the functional role of most gut microorganisms remains unknown. Identifying the stable members of the gut microbiota and understanding their functional roles could help in the selection of positive traits or act as a proxy for fish health in aquaculture. Here, we analyze the gut microbial community of farmed juvenile Arctic char (Salvelinus alpinus) and reconstruct the metabolic potential of its main symbionts. The gut microbiota of Arctic char undergoes a succession in community composition during the first weeks post-hatch, with a decrease in Shannon diversity and the establishment of three dominant bacterial taxa. The genome of the most abundant bacteria, a Mycoplasma sp., shows adaptation to rapid growth in the nutrient-rich gut environment. The second most abundant taxon, a Brevinema sp., has versatile metabolic potential, including genes involved in host mucin degradation and utilization. However, during periods of absent gut content, a Ruminococcaceae bacterium becomes dominant, possibly outgrowing all other bacteria through the production of secondary metabolites involved in quorum sensing and cross-inhibition while benefiting the host through short-chain fatty acid production. Whereas Mycoplasma is often present as a symbiont in farmed salmonids, we show that the Ruminococcaceae species is also detected in wild Arctic char, suggesting a close evolutionary relationship between the host and this symbiotic bacterium.

EN